No, strangefully the 00_master.conf from the last config backup looks like this:
Code:
#
# ispCP ω (OMEGA) a Virtual Hosting Control System
#
# @copyright    2001-2006 by moleSoftware GmbH
# @copyright    2006-2008 by ispCP | http://isp-control.net
# @version        SVN: $ID$
# @link            http://isp-control.net
# @author        ispCP Team
#
# @license
#   This program is free software; you can redistribute it and/or modify it under
#   the terms of the MPL General Public License as published by the Free Software
#   Foundation; either version 1.1 of the License, or (at your option) any later
#   version.
#   You should have received a copy of the MPL Mozilla Public License along with
#   this program; if not, write to the Open Source Initiative (OSI)
#   http://opensource.org | osi@opensource.org
#
################################################################################
#
# Master Begin
#
<VirtualHost {BASE_SERVER_IP}:80>
    ServerAdmin     {DEFAULT_ADMIN_ADDRESS}
    DocumentRoot    {ROOT_DIR}/gui
    ServerName      {BASE_SERVER_VHOST}
    ErrorLog        {APACHE_USERS_LOG_DIR}/{BASE_SERVER_VHOST}-error.log
    TransferLog     {APACHE_USERS_LOG_DIR}/{BASE_SERVER_VHOST}-access.log
    CustomLog       {APACHE_LOG_DIR}/{BASE_SERVER_VHOST}-traf.log traff
    CustomLog       {APACHE_LOG_DIR}/{BASE_SERVER_VHOST}-combined.log combined
    Alias /errors   {ROOT_DIR}/gui/errordocs/
    ErrorDocument 401 /errors/401.html
    ErrorDocument 403 /errors/403.html
    ErrorDocument 404 /errors/404.html
    ErrorDocument 500 /errors/500.html
    ErrorDocument 503 /errors/503.html
    Alias /pma      {ROOT_DIR}/gui/tools/pma/
    Alias /webmail  {ROOT_DIR}/gui/tools/webmail/
    Alias /ftp      {ROOT_DIR}/gui/tools/filemanager/
    <IfModule suexec_module>
           SuexecUserGroup vu2000 vu2000
    </IfModule>
    <Directory {ROOT_DIR}/gui>
        Options -Indexes Includes FollowSymLinks MultiViews
        AllowOverride None
        Order allow,deny
        Allow from all
    </Directory>
    <IfModule mod_fastcgi.c>
        ScriptAlias /php4/ {PHP_STARTER_DIR}/master/
        ScriptAlias /php5/ {PHP_STARTER_DIR}/master/
        <Directory "{PHP_STARTER_DIR}/master">
            AllowOverride None
            Options +ExecCGI MultiViews -Indexes
            Order allow,deny
            Allow from all
        </Directory>
    </IfModule>
    <IfModule mod_php4.c>
        <Directory {ROOT_DIR}/gui>
            php_admin_value open_basedir "{WWW_DIR}/{DMN_NAME}/:{CONF_DIR}/:{MR_LOCK_FILE}:/proc/:/bin/df:/bin/mount:{RKHUNTER_LOG}:{CHKROOTKIT_LOG}:{PEAR_DIR}/{OTHER_ROOTKIT_LOG}"
            php_admin_value session.save_path "{ROOT_DIR}/gui/phptmp/"
            php_admin_value upload_tmp_dir "{ROOT_DIR}/gui/phptmp/"
        </Directory>
    </IfModule>
    <IfModule mod_php5.c>
        <Directory {ROOT_DIR}/gui>
            php_admin_value open_basedir "{WWW_DIR}/{DMN_NAME}/:{CONF_DIR}/:{MR_LOCK_FILE}:/proc/:/bin/df:/bin/mount:{RKHUNTER_LOG}:{CHKROOTKIT_LOG}:{PEAR_DIR}/{OTHER_ROOTKIT_LOG}"
            php_admin_value session.save_path "{ROOT_DIR}/gui/phptmp/"
            php_admin_value upload_tmp_dir "{ROOT_DIR}/gui/phptmp/"
        </Directory>
    </IfModule>
</VirtualHost>
#
# Master End
#
 
but this isn't the same file that there was before the update. It seems to me that the backup script doesn't backup the correct files. Other files than from the directory /apache seem to be correct.